Cell (biology)

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Cells in culture, stained for keratin (red) and DNA (green)

The cell is the structural and functional unit of all living organisms, sometimes called the "building blocks of life." Some organisms, such as bacteria, are unicellular, consisting of a single cell. Other organisms, such as humans, are multicellular, (humans have an estimated 100,000 billion = 10¹⁴ cells). The cell theory, first developed in the 19th century, states that all organisms are composed of one or more cells; all cells come from preexisting cells; all vital functions of an organism occur within cells and that cells contain the hereditary information necessary for regulating cell functions and for transmitting information to the next generation of cells.

The word cell comes from the Latin cella, a small room. The name was chosen by Robert Hooke when he compared the cork cells he saw to small rooms monks lived in.

Overview

Properties of cells

Mouse cells grown in a culture dish. These cells grow in large clumps but each individual cell is about 10 micrometres across.

Each cell is at least somewhat self-contained and self-maintaining: it can take in nutrients, convert these nutrients into energy, carry out specialized functions, and reproduce as necessary. Each cell stores its own set of instructions for carrying out each of these activities.

All cells share several abilities:

• Reproduction by cell division.
• Metabolism, including taking in raw materials, building cell components, creating energy, molecules and releasing by-products. The functioning of a cell depends upon its ability to extract and use chemical energy stored in organic molecules. This energy is derived from metabolic pathways.
• Synthesis of proteins, the functional workhorses of cells, such as enzymes. A typical mammalian cell contains up to 10,000 different proteins.
• Response to external and internal stimuli such as changes in temperature, pH or nutrient levels.
• Traffic of vesicles.

Types of cells

The cells of eukaryotes and prokaryotes. - This figure illustrates a typical human cell (eukaryote) and a typical bacterium (prokaryote). The drawing on the left highlights the internal structures of eukaryotic cells, including the nucleus (light blue), the nucleolus (intermediate blue), mitochondria (orange), and ribosomes (dark blue). The drawing on the right demonstrates how bacterial DNA is housed in a structure called the nucleoid (very light blue), as well as other structures normally found in a prokaryotic cell, including the cell membrane (black), the cell wall (intermediate blue), the capsule (orange), ribosomes (dark blue), and a flagellum (also black).

One way to classify cells is whether they live alone or in groups. Organisms vary from single cells (called single-celled or unicellular organisms) that function and survive more or less independently, through colonial forms with cells living together, to multicellular forms in which cells are specialized. 220 types of cells and tissues make up the multicellular human body.

Cells can also be classified into two categories based on their internal structure.

• Prokaryotic cells are structurally simple. They are found only in single-celled and colonial organisms. In the three-domain system of scientific classification, prokaryotic cells are placed in the domains Archaea and Eubacteria.

• Eukaryotic cells have organelles with their own membranes. Single-celled eukaryotic organisms such as amoebae and some fungi are very diverse, but many colonial and multicellular forms such as plants, animals, and brown algae also exist.

Subcellular components

Schematic of typical animal cell, showing subcellular components. Organelles: (1) nucleolus (2) nucleus (3) ribosome (4) vesicle,(5) rough endoplasmic reticulum (ER), (6) Golgi apparatus, (7) Cytoskeleton, (8) smooth ER, (9) mitochondria, (10) vacuole, (11) cytoplasm, (12) lysosome, (13) centrioles

Schematic of typical plant cell (see table 2 for a comparison between plant and animal cells)

All cells whether prokaryotic or eukaryotic have a membrane, which envelopes the cell, separates its interior from its environment, controls what moves in and out, and maintains the electric potential of the cell. Inside the membrane, a salty cytoplasm takes up most of the cell volume. All cells possess DNA, the hereditary material of genes and RNA, which contain the information necessary to build various proteins such as enzymes, the cell's primary machinery. There are also other kinds of biomolecules in cells. This article will list these primary components of the cell then briefly describe their function.

Cell membrane - a cell's protective coat

Main article: Cell membrane

The cytoplasm of a eukaryotic cell is surrounded by a plasma membrane. A form of plasma membrane is also found in prokaryotes, but is usually referred to as the cell membrane. This membrane serves to separate and protect a cell from its surrounding environment and is made mostly from a double layer of lipids (fat-like molecules) and proteins. Embedded within this membrane are a variety of other molecules that act as channels and pumps, moving different molecules into and out of the cell.

Cytoskeleton - a cell's scaffold

Main article: Cytoskeleton

The cytoskeleton is an important, complex, and dynamic cell component. It acts to organize and maintain the cell's shape; anchors organelles in place; helps during endocytosis, the uptake of external materials by a cell; and moves parts of the cell in processes of growth and motility. There are a great number of proteins associated with the cytoskeleton, each controlling a cell's structure by directing, bundling, and aligning filaments.

Genetic material

Two different kinds of genetic material exist: deoxyribonucleic acid (DNA) and ribonucleic acid (RNA). Most organisms use DNA for their long term information storage, but some viruses (retroviruses) have RNA as their genetic material. The biological information contained in an organism is encoded in its DNA or RNA sequence. RNA is also used for information transport (e.g. mRNA) and enzymatic functions (e.g. ribosomal RNA) in organisms that use RNA for the genetic code itself.

Prokaryotic genetic material is organized in a simple circular DNA molecule (the bacterial chromosome) in the nucleoid region of the cytoplasm. Eukaryotic genetic material is divided into different, linear molecules called chromosomes inside a discrete nucleus, usually with additional genetic material in some organelles like mitochondria and chloroplasts (see endosymbiotic theory).

A human cell, e.g. has genetic material in the nucleus (the nuclear genome) and in the mitochondria (the mitochondrial genome). The nuclear genome is divided into 46 linear DNA molecules called chromosomes. The mitochondrial genome is a circular DNA molecule separate from the nuclear DNA. Although the mitochondrial genome is very small, it codes for some important proteins.

Foreign genetic material (most commonly DNA) can also be artificially introduced into the cell by a process called transfection. This can be transient, if the DNA is not inserted into the cell's genome, or stable, if it is.

Organelles

Main article: Organelle

The human body contains many different organs, such as the heart, lung, and kidney, with each organ performing a different function. Cells also have a set of "little organs", called organelles, that are adapted and/or specialized for carrying out one or more vital functions. Membrane-bound organelles are only found in eukaryotes.

• Cell nucleus - a cell's information center: The cell nucleus is the most conspicuous organelle found in a eukaryotic cell. It houses the cell's chromosomes and is the place where almost all DNA replication and RNA synthesis occur. The nucleus is spheroid in shape and separated from the cytoplasm by a double membrane called the nuclear envelope. The nuclear envelope isolates and protects a cell's DNA from various molecules that could accidentally damage its structure or interfere with its processing. During processing, DNA is transcribed, or copied into a special RNA, called mRNA. This mRNA is then transported out of the nucleus, where it is translated into a specific protein molecule. In prokaryotes, DNA processing takes place in the cytoplasm.

• Ribosomes - the protein production machine: Ribosomes are found in both prokaryotes and eukaryotes. The ribosome is a large complex composed of many molecules, including RNAs and proteins, and is responsible for processing the genetic instructions carried by an mRNA. The process of converting an mRNA's genetic code into the exact sequence of amino acids that make up a protein is called translation. Protein synthesis is extremely important to all cells, and therefore a large number of ribosomes—sometimes hundreds or even thousands—can be found throughout a cell.

• Mitochondria and chloroplasts - the power generators: Mitochondria are self-replicating organelles that occur in various numbers, shapes, and sizes in the cytoplasm of all eukaryotic cells. As mentioned earlier, mitochondria contain their own genome that is separate and distinct from the nuclear genome of a cell. Mitochondria play a critical role in generating energy in the eukaryotic cell, and this process involves a number of complex metabolic pathways. Chloroplasts are larger than mitochondria, and convert solar energy into a chemical energy ("food") via photosynthesis. Like mitochondria, chloroplasts have their own genome. Chloroplasts are found only in photosynthetic eukaryotes like plants and algae. There are a number of plant organelles that are modified chloroplasts; they are broadly called plastids and are often involved in storage.

• Endoplasmic reticulum and Golgi apparatus - macromolecule managers:: The endoplasmic reticulum (ER) is the transport network for molecules targeted for certain modifications and specific destinations, as compared to molecules that will float freely in the cytoplasm. The ER has two forms: the rough ER, which has ribosomes on its surface, and the smooth ER, which lacks them. Translation of the mRNA for those proteins that will either stay in the ER or be exported from the cell occurs at the ribosomes attached to the rough ER. The smooth ER is important in lipid synthesis, detoxification and as a calcium reservoir. The Golgi apparatus, sometimes called a Golgi body or Golgi complex is the central delivery system for the cell and is a site for protein processing, packaging, and transport. Both organelles consist largely of heavily folded membranes.

• Lysosomes and peroxisomes - the cellular digestive system: Lysosomes and peroxisomes are often referred to as the garbage disposal system of a cell. Both organelles are somewhat spherical, bound by a single membrane, and rich in digestive enzymes, naturally occurring proteins that speed up biochemical processes. For example, lysosomes can contain more than three dozen enzymes for degrading proteins, nucleic acids, and certain sugars called polysaccharides. Here we can see the importance behind compartmentalization of the eukaryotic cell. The cell could not house such destructive enzymes if they were not contained in a membrane-bound system.

• Centrioles - They help in the formation of mitotic appratus. Two centrioles are present in the animal cells. They are also found in some fungi and algae cells.

Anatomy of cells

Prokaryotic cells

Prokaryotes are distinguished from eukaryotes on the basis of nuclear organization, specifically their lack of a nuclear membrane. Prokaryotes also lack most of the intracellular organelles and structures that are characteristic of eukaryotic cells (an important exception is the ribosomes, which are present in both prokaryotic and eukaryotic cells). Most of the functions of organelles, such as mitochondria, chloroplasts, and the Golgi apparatus, are taken over by the prokaryotic plasma membrane. Prokaryotic cells have three architectural regions: appendages called flagella and pili—proteins attached to the cell surface; a cell envelope consisting of a capsule, a cell wall, and a plasma membrane; and a cytoplasmic region that contains the cell genome (DNA) and ribosomes and various sorts of inclusions. Other differences include:

• The plasma membrane (a phospholipid bilayer) separates the interior of the cell from its environment and serves as a filter and communications beacon.
• Most prokaryotes have a cell wall (some exceptions are Mycoplasma (a bacterium) and Thermoplasma (an archaeon)). It consists of peptidoglycan in bacteria, and acts as an additional barrier against exterior forces. It also prevents the cell from "exploding" from osmotic pressure against a hypotonic environment. A cell wall is also present in some eukaryotes like fungi, but has a different chemical composition
• A prokaryotic chromosome is usually a circular molecule (an exception is that of the bacterium Borrelia burgdorferi, which causes Lyme disease). Even without a real nucleus, the DNA is condensed in a nucleoid. Prokaryotes can carry extrachromosomal DNA elements called plasmids, which are usually circular. Plasmids can carry additional functions, such as antibiotic resistance.

Eukaryotic cells

There are two types of cells, eukaryotic and prokaryotic. Eukaryotic cells are usally found in multi-cellular organisms, while prokaryotic cells are usually on their own. Eukaryotic cells are about 10 times the size of a typical prokaryote and can be as much as 1000 times greater in volume. The major difference between prokaryotes and eukaryotes is that eukaryotic cells contain membrane-bound compartments in which specific metabolic activities take place. Most important among these is the presence of a nucleus, a membrane-delineated compartment that houses the eukaryotic cell's DNA. It is this nucleus that gives the eukaryote its name, which means "true nucleus." Other differences include:

• The plasma membrane resembles that of prokaryotes in function, with minor differences in the setup. Cell walls may or may not be present.
• The eukaryotic DNA is organized in one or more linear molecules, called chromosomes, which are highly condensed (i.e. folded around histones). All chromosomal DNA is stored in the cell nucleus, separated from the cytoplasm by a membrane. Some eukaryotic organelles can contain some DNA.
• Eukaryotes can move using cilia or flagella. The flagella are more complex than those of prokaryotes.

Cell functions

Cell growth and metabolism

Main articles: Cell growth, Cell metabolism

Between successive cell divisions cells grow through the functioning of cellular metabolism. Cell metabolism is the process by which individual cells process nutrient molecules. Metabolism has two distinct divisions; catabolism, in which the cell breaks down complex molecules to produce energy and reducing power, and anabolism, where the cell uses energy and reducing power to construct complex molecules and perform other biological functions. Complex sugars consumed by the organism can be broken down into a less chemically complex sugar molecule called glucose. Once inside the cell, glucose is broken down to make adenosine triphosphate (ATP), a form of energy, via two different pathways.

The first pathway, glycolysis, requires no oxygen and is referred to as anaerobic metabolism. Each reaction is designed to produce some hydrogen ions that can then be used to make energy packets (ATP). In prokaryotes, glycolysis is the only method used for converting energy. The second pathway, called the Krebs cycle, or citric acid cycle, occurs inside the mitochondria and is capable of generating enough ATP to run all the cell functions.

Making new cells

Main article: Cell division

An overview of protein synthesis.
Within the nucleus of the cell (light blue), genes (DNA, dark blue) are transcribed into RNA. This RNA is then subject to post-transcriptional modification and control, resulting in a mature mRNA (red) that is then transported out of the nucleus and into the cytoplasm (peach), where it undergoes translation into a protein. mRNA is translated by ribosomes (purple) that match the three-base codons of the mRNA to the three-base anti-codons of the appropriate tRNA. Newly synthesized proteins (black) are often further modified, such as by binding to an effector molecule (orange), to become fully active.

Cell division involves a single cell (called a mother cell) dividing into two daughter cells. This leads to growth in multicellular organisms (the growth of tissue) and to procreation (vegetative reproduction) in unicellular organisms. Prokaryotic cells divide by binary fission. Eukaryotic cells usually undergo a process of nuclear division, called mitosis, followed by division of the cell, called cytokinesis. A diploid cell may also undergo meiosis to produce haploid cells, usually four. Haploid cells serve as gametes in multicellular organisms, fusing to form new diploid cells. DNA replication, or the process of duplicating a cell's genome, is required every time a cell divides. Replication, like all cellular activities, requires specialized proteins for carrying out the job.

Protein synthesis

Main article: Protein biosynthesis

Protein synthesis is the process in which the cell builds proteins. DNA transcription refers to the synthesis of a messenger RNA (mRNA) molecule from a DNA template. This process is very similar to DNA replication. Once the mRNA has been generated, a new protein molecule is synthesized via the process of translation.

The cellular machinery responsible for synthesizing proteins is the ribosome. The ribosome consists of structural RNA and about 80 different proteins. When the ribosome encounters an mRNA, the process of translating an mRNA to a protein begins. The ribosome accepts a new transfer RNA, or tRNA—the adaptor molecule that acts as a translator between mRNA and protein—bearing an amino acid, the building block of the protein. Another site binds the tRNA that becomes attached to the growing chain of amino acids, forming the a polypeptide chain that will eventually be processed to become a protein.

Origins of cells

Main article: Origin of life

The origin of cells has to do with the origin of life, and was one of the most important steps in evolution of life as we know it. The birth of the cell marked the passage from prebiotic chemistry to biological life.

Origin of first cell

If life is viewed from the point of view of